trna

small RNA analysis from NGS data

Cython bindings and Python interface to ARAGORN, a (t|mt|tm)RNA gene finder.

Nanopore direct tRNA sequencing method refinement and RNA modification benchmarking

A Snakemake workflow for single copy gene, transposable elements and tRNA expression analysis

Robust tRNA modification discovery from Nanopore direct tRNA sequencing

Modular Nextflow pipeline for small RNA-seq analysis

📦 Importing tRNAscan-SE output as GRanges

📦 tRNAdbImport: Importing from to tRNAdb and mitotRNAdb as GRanges

📦 tRNA: Analyzing tRNA sequences and structures

Streamlit-based visualization application of PerSeqPIPE results.

Comprehensive in silico genomic analysis pipeline for domesticating non-model bacteria (Core module)

Scripts used in the manuscript "Pyridoxal phosphate-dependent biosynthesis of aminovaleramide by AvaS in tRNA"

MitoTIP mis-scores human mitochondrial tRNA variants by structural region: 23% of stem variants wrong vs 1.6% of loop variants, 14-fold. Region-specific thresholds raise held-out sensitivity from 75.9% to 89.7%. Data, code and results included.

Tools to analyze the tRNA gene content of genomes