Identification of differential RNA modifications from nanopore direct RNA sequencing
RNA modifications detection from Nanopore dRNA-Seq data
Nanopore direct tRNA sequencing method refinement and RNA modification benchmarking
An awesome Oxford Nanopore Pipeline for direct RNA-sequencing
Robust tRNA modification discovery from Nanopore direct tRNA sequencing
NanoML-5moU: A Machine Learning framework to detect 5mou modification in IVT direct RNA sequencing data
Convert mpileup format to base count tsv table
An R package for managing, summarizing, and analyzing third-generation methylation sequencing data (.ch3 files). Includes database creation, QC, differential methylation, and visualization tools.
📦 Modstrings: implementation of Biostrings to work with nucleotide sequences containing modified nucleotides.
A multiomics approach reveals RNA dynamics promote cellular sensitivity to DNA hypomethylation
Annotates modomics RNA sequences for easy viewing of RNA modifications and nucleotide positions.
RNA secondary structure prediction from Nanopore direct RNA sequencing.
handful of tools that might be needed before or after HAMR
Hierarchical Bayesian framework for RNA modification detection from nanopore direct RNA sequencing (CUDA-accelerated DTW + HMM)
A bundle of HAMRtools for High-throughput RNA modification prediction and analysis
Pipeline for glycoRNA sequencing and analysis
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