Issues

• Quality masking

  zwdzwd/sesame#219 · Filter by author MichelleSollok opened on Sep 18, 2026
  3

• Allow parameters to be passed to DNA::segment function from cnSegmentation call

  zwdzwd/sesame#218 · Filter by author j-andrews7 opened on Jun 30, 2026

• Discrepency between p-values from openSesame and manual calculation

  zwdzwd/sesame#216 · Filter by author Blosberg opened on May 27, 2026

• How to merge methylation data from EPIC V1 arrays and EPIC V2 arrays?

  zwdzwd/sesame#215 · Filter by author ralanany opened on Apr 5, 2026
  1

• Sesame CPG annotation

  zwdzwd/sesame#214 · Filter by author Nikhila123456 opened on Feb 16, 2026

• Is SeSAME package available for any downstream analysis such as differential methylation analysis, or determining differential regions?

  zwdzwd/sesame#213 · Filter by author elffairy90 opened on Dec 22, 2025

• Error in .sesameDataGet(title): Data custom.addressSpecies not found.

  zwdzwd/sesame#212 · Filter by author geethavenk opened on Jul 9, 2025

• H3K3me1 Mislabel in KYCG

  zwdzwd/sesame#211 · Filter by author lucafagnocchi opened on Jul 1, 2025

• prep = '' vs prep = '0'

  zwdzwd/sesame#210 · Filter by author ziphra opened on Jun 30, 2025

• error wit hparallelization

  zwdzwd/sesame#209 · Filter by author lfaino opened on Jun 18, 2025

• a bug in noob function

  zwdzwd/sesame#208 · Filter by author niexiaoqing opened on Jun 18, 2025

• inferEthnicity Not running for EPICv2.

  zwdzwd/sesame#206 · Filter by author samreenzafer opened on May 1, 2025
  2

• Error in stopAndCache(title)

  zwdzwd/sesame#205 · Filter by author marazzoli opened on Apr 8, 2025

• KYCG testEnrichmentSEA function appears to give biased p-values that are stronger for positive estimates than negative ones.

  zwdzwd/sesame#203 · Filter by author jdreyf opened on Apr 1, 2025
  2

• Does QCDPB normalization in EPICv2 process samples individually or jointly when using an sdf list?

  zwdzwd/sesame#202 · Filter by author fjgalvezcnic opened on Mar 24, 2025
  1

• Is there a command to directly connect to the existing ExperimentHub?

  zwdzwd/sesame#201 · Filter by author mynamezyl opened on Mar 14, 2025

• The criteria of the DMR

  zwdzwd/sesame#200 · Filter by author Moana96 opened on Mar 10, 2025

• Is sesameData_getGenesByProbes() existing?

  zwdzwd/sesame#199 · Filter by author qslin opened on Mar 9, 2025

• recommended Prep Code for MSA arrays

  zwdzwd/sesame#198 · Filter by author claus-h-g opened on Mar 5, 2025

• Where to get further annotation of KYCG DBs, e.g. what does metagene "-5" mean?

  zwdzwd/sesame#197 · Filter by author jdreyf opened on Feb 27, 2025

• cnSegmentation() Error - colnames missing

  zwdzwd/sesame#195 · Filter by author cewim opened on Jan 27, 2025

• imputeBetas does not work for example EPICv2 data (sesame 1.24.0)

  zwdzwd/sesame#194 · Filter by author dwuab opened on Jan 14, 2025
  5

• DML models betas using lm() but shouldn't it use glm(family = "binomial") or model M-values?

  zwdzwd/sesame#192 · Filter by author jdreyf opened on Dec 19, 2024
  3

• openSesame BiocParallel error

  zwdzwd/sesame#191 · Filter by author krishnakanch opened on Dec 4, 2024

• Error in openSesame()

  zwdzwd/sesame#184 · Filter by author RosyGH opened on Oct 16, 2024
  7