Reproducible workflow for SARS-CoV-2 recombinant sequence detection.
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May 15, 2023 - Python
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recombinant
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CGR package for phylogeny. Pipeline compare multiple whole genome sequences using alignment free approach Chaos Game Representation (CGR). CRG core function creates the frequencies object for each sequence which can be used to calculate distances among sequences.
virus phylogenetic-trees phylogenetics bacteria maximum-likelihood phylogenomics phylogeny crg whole chaos-game chaos-game-representation sars-cov-2 recombinant phylogeny-plots cgrphylo neighbour-joining
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Feb 23, 2026 - R
Precfinder is a tool to identify SARS-CoV-2 recombinants.
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Feb 9, 2023 - R
Governance & Innovation Engine
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Oct 27, 2020 - Vue
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