Sitelet https://github.com/topics/msqrob2
Skip to content
#

msqrob2

Star

Here are 3 public repositories matching this topic...

Language: All
Filter by language
All 3 R 2 Shell 1

Qasim-Hussain-Code / msqrob2_tmt_proteomics_pipeline

Star 0

TMT proteomics differential abundance with msqrob2 mixed models, benchmarked on spike-in mixtures with known ground truth to measure ratio compression and the cost of ignoring the plex, and applied to a high fat diet study in mouse adipose tissue.

bioinformatics r bioconductor proteomics mass-spectrometry multiplexing mixed-models batch-effects reporter-ions tmt proteome-discoverer qfeatures isobaric-labeling differential-abundance msqrob2 spike-in-benchmark tandem-mass-tags ratio-compression sps-ms3 reference-channels
  • Updated Sep 23, 2026
  • R

Qasim-Hussain-Code / msqrob2_lfq_proteomics_pipeline

Star 0

Label-free DDA proteomics differential abundance analysis, benchmarked against a spike-in study with known ground truth and applied to an arginine transporter knockout in Francisella tularensis.

bioinformatics r computational-biology bioconductor proteomics dda mass-spectrometry maxquant false-discovery-rate label-free-quantification mixed-models robust-regression qfeatures lfq differential-abundance bacterial-pathogenesis msqrob2 spike-in-benchmark pseudo-replication francisella-tularensis
  • Updated Sep 18, 2026
  • R

Qasim-Hussain-Code / sage_lfq_proteomics_pipeline

Star 0

End to end command line proteomics, Thermo RAW files through Sage search and label-free quantification to differential abundance, with entrapment-based validation of the reported false discovery rate.

bioinformatics sage bioconductor proteomics dda mass-spectrometry mzml false-discovery-rate label-free-quantification thermorawfileparser qfeatures lfq differential-abundance bacterial-pathogenesis msqrob2 francisella-tularensis
  • Updated Sep 19, 2026
  • Shell

Add this topic to your repo

To associate your repository with the msqrob2 topic, visit your repo's landing page and select "manage topics."

Learn more