Interactive R package to quantify, analyse and visualise alternative splicing
Variational Auto-Encoder that generates synthetic gene expression data
Healthcare-Researcher-Connector Package: Federated Learning tool for bridging the gap between Healthcare providers and researchers
A unified downloader+preprocessor for cancer genomics datasets
An R interface to the GTEx Portal API
Tejaas - a tool for discovering trans-eQTLs
Multilayer modelling of the human transcriptome and biological mechanisms of complex diseases and traits
Gene ID Mapping for Genotype-Tissue Expression (GTEx) Data
Integration tests and reference examples for all external scientific data vendors used by Cyto.
Pipeline: Identification of cis-regulatory elements by matrix scoring and analysis of supporting empirical biological data.
Describes how to download RNA-Seq controlled data from GTEx via sra-toolkit and from TCGA via GDC Data Transfer Tool
🩺 Assessing StringTie, Salmon, and Kallisto with simulated RNA-Seq reads with noises introduced in read- and annotation-level.
Blood-based multi-tissue gene expression inference with Bayesian regression
Examples on processing and working with TCGA mutation and RNA-Seq data
Zytome is declarative library for handling gene expression data for various data portals or datasets.
A comprehensive bioinformatics pipeline for downloading and analyzing genes associated with specific phenotypes from multiple biological databases. This package provides both R scripts for gene retrieval and Python analysis tools for downstream analysis.
CFDE Multi-Omics and Protein Language Models
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