Sitelet https://github.com/samtools/bcftools/commits/develop/misc

Commits

History for

Commits on Jul 23, 2026

Fix plot-vcfstats to work on uncompressed data.

jkbonfield
authored and
pd3
committed
4ee48aa

Commits on Jul 13, 2026

Read compressed vchk files
pd3
committed
270751f

Commits on Mar 13, 2026

Clearer error message

muffato
authored and
pd3
committed
16f2e71
Directly invoke gunzip rather than the zless wrapper

muffato
authored and
pd3
committed
3b22f2f
Safer invocation of zless

authored and
pd3
committed
3167b5b
Reference the right input file name

authored and
pd3
committed
39fb59a

Commits on Oct 29, 2025

Fix JS libraries embedding for offline rendering

AlekseiVambol
authored and
pd3
committed
5096c7c

Commits on Jun 12, 2025

Use a different metric for selecting good sites
pd3
committed
1574694

Commits on Apr 10, 2025

Add the misc/vrfs-variances script
pd3
committed
790c317

Commits on Mar 18, 2025

Add experimental support for alternative genetic code tables
pd3
committed
ccffa42

Commits on Mar 1, 2025

Minor display improvements
pd3
committed
1068d45

Commits on Feb 28, 2025

Add new -c,-e options and fix a bug in display after rescaling via slider
pd3
committed
760bf04

Commits on Feb 20, 2025

Make plot-vcfstats work with -s, --sample-names
pd3
committed
02b7246

Commits on Jan 16, 2025

Add closing body and html tags
pd3
committed
bfb18d8

Commits on Dec 28, 2024

Update bcftools/roh and roh-viz documentation
pd3
committed
e2815b4
Add HTML/JavaScript visualization of bcftools/roh results
pd3
committed
68f13f2

Commits on May 29, 2024

Fix typos

cmdcolin
authored and
pd3
committed
5d48dbc

Commits on Apr 25, 2023

Improvements in GFF parsing code
pd3
committed
5b4c539

Commits on Mar 10, 2023

Support auto indexing during writing BCF and VCF.gz via new `--write-index` option
pd3
committed
9b352b7

Commits on Mar 7, 2023

Modify the substitution graph
pd3
committed
ab333ef

Commits on Feb 24, 2023

Collect and plot new VAF stats
pd3
committed
db8d657

Commits on Jan 11, 2023

Make GFF file parsing more flexible. Add new misc/gff2gff script
pd3
committed
f6acc12

Commits on Nov 11, 2022

Another error message alteration.
whitwham
committed
1829ad2

Commits on Nov 1, 2022

Error comments changed on review.
whitwham
committed
20ce302

Commits on Oct 31, 2022

Added error checks.
whitwham
committed
f5c8b4e

Commits on Oct 26, 2022

Make the --af-annots argument optional
pd3
committed
c9aed47

Commits on May 2, 2022

Support both phased (1|0) and unphsed (1/0) genotypes. Resolves #1710
pd3
committed
3e7fae9

Commits on Jun 23, 2021

Summer 2021 release copyright updates.
whitwham
committed
a1e68db

Commits on Nov 25, 2020

Changes to QUAL and ts/tv plotting stats
pd3
committed
09f2dbd

Commits on Sep 16, 2020

Install misc/gff2gff.py and fix its #! to use python3
jmarshall
committed
f13b8ab

Commits on Sep 14, 2020

HWE requires customized merging. (Note this cannot be done exactly, is an approximation.) Fixes #1296
pd3
committed
7cd6a05

Commits on Sep 7, 2020

Add gff2gff.py script contributed by @flashton2003 in #530
pd3
committed
d1b74cd

Commits on Aug 24, 2020

Provide a better diagnostic error message. Resolves #1280
pd3
committed
b798a21

Commits on Apr 29, 2020

Migrate plot-roh.py to python3
pd3
committed
c645d04

Commits on Apr 21, 2020

Find bash via $PATH rather than hard-coding /bin/bash
jmarshall
committed
d401daa