Commits

Breadcrumbs

History for

onmain

User selector

All users

Datepicker

All time

Commit history

Commits on Jul 24, 2026

• ci: update actions and dependencies in CI workflows

  dwpeng

  committed
  ceb1412View commit details

  Copy full SHA for ceb1412

  View code at this pointBrowse repository at this point

• ci: update GitHub Actions to use latest versions of actions

  Show description for c26d3b6
  dwpeng

  committed
  c26d3b6View commit details

  Copy full SHA for c26d3b6

  View code at this pointBrowse repository at this point

Commits on May 19, 2026

• feat: new kemr iterator impl

  dwpeng

  committed
  0dbbeddView commit details

  Copy full SHA for 0dbbedd

  View code at this pointBrowse repository at this point

Commits on Apr 17, 2026

• chore: add more test

  dwpeng

  committed
  7070d4eView commit details

  Copy full SHA for 7070d4e

  View code at this pointBrowse repository at this point

Commits on Apr 14, 2026

• feat: add close function to manage seqioFile lifecycle

  dwpeng

  committed
  6773759View commit details

  Copy full SHA for 6773759

  View code at this pointBrowse repository at this point

Commits on Mar 20, 2026

• add a wrapper function `open` for seqioFile init.

  dwpeng

  committed
  7923079View commit details

  Copy full SHA for 7923079

  View code at this pointBrowse repository at this point

Commits on Jan 28, 2026

• use `with` stmt

  dwpeng

  committed
  421816cView commit details

  Copy full SHA for 421816c

  View code at this pointBrowse repository at this point

Commits on Oct 30, 2025

• Optimize memory allocation and parsing performance

  Show description for fcd24d6
  

  Copilot

  and

  dwpeng

  committed
  fcd24d6View commit details

  Copy full SHA for fcd24d6

  View code at this pointBrowse repository at this point

Commits on Oct 21, 2025

• chore: fix import error.

  dwpeng

  committed
  61a808eView commit details

  Copy full SHA for 61a808e

  View code at this pointBrowse repository at this point

Commits on Oct 20, 2025

• feat: delete `stdin`/`stdout` impl in python

  dwpeng

  committed
  b4cc547View commit details

  Copy full SHA for b4cc547

  View code at this pointBrowse repository at this point

Commits on Sep 16, 2025

• feat: add offset and size property

  dwpeng

  committed
  6ab1c8fView commit details

  Copy full SHA for 6ab1c8f

  View code at this pointBrowse repository at this point

Commits on Sep 12, 2025

• chore: add pickle support for `Record`

  dwpeng

  committed
  2106a48View commit details

  Copy full SHA for 2106a48

  View code at this pointBrowse repository at this point

Commits on Aug 15, 2025

• remove validChars

  dwpeng

  committed
  29da2c2View commit details

  Copy full SHA for 29da2c2

  View code at this pointBrowse repository at this point

Commits on Aug 13, 2025

• chore: add write option

  dwpeng

  committed
  cb69077View commit details

  Copy full SHA for cb69077

  View code at this pointBrowse repository at this point

Commits on May 10, 2025

• fix: update version to 0.1.4 and rename hpc_commpress method to hpc for consistency

  dwpeng

  committed
  2399593View commit details

  Copy full SHA for 2399593

  View code at this pointBrowse repository at this point

Commits on Apr 28, 2025

• refactor: remove unused optional include in fastseqio.cc; streamline dependencies

  dwpeng

  committed
  f70989cView commit details

  Copy full SHA for f70989c

  View code at this pointBrowse repository at this point

• fix: update CI workflow to include Zig setup and static zlib builds for Linux, Windows, and MacOS; enhance setup.py for platform-specific extensions

  dwpeng

  committed
  5eba1d9View commit details

  Copy full SHA for 5eba1d9

  View code at this pointBrowse repository at this point

Commits on Apr 23, 2025

• fix: update version to 0.1.2 in setup.py and pyproject.toml; simplify platform checks in fastseqio.py

  dwpeng

  committed
  2d1cf37View commit details

  Copy full SHA for 2d1cf37

  View code at this pointBrowse repository at this point

Commits on Apr 21, 2025

• fix: handle empty validChars and improve assertion formatting in seqioFile

  dwpeng

  committed
  e378da3View commit details

  Copy full SHA for e378da3

  View code at this pointBrowse repository at this point

• feat: add length property to Record class and update tests accordingly

  dwpeng

  committed
  effd48fView commit details

  Copy full SHA for effd48f

  View code at this pointBrowse repository at this point

Commits on Apr 7, 2025

• fix: fix validChars

  dwpeng

  committed
  e94b53fView commit details

  Copy full SHA for e94b53f

  View code at this pointBrowse repository at this point

Commits on Jan 9, 2025

• feat: add detailed docstrings for sequence manipulation methods and file reading/writing

  dwpeng

  committed
  513960bView commit details

  Copy full SHA for 513960b

  View code at this pointBrowse repository at this point

• refactor: update subseq method to use length parameter and improve platform checks

  dwpeng

  committed
  f0bd6c7View commit details

  Copy full SHA for f0bd6c7

  View code at this pointBrowse repository at this point

Commits on Jan 6, 2025

• fix: use method `length` to calc length of sequence

  dwpeng

  committed
  877c02aView commit details

  Copy full SHA for 877c02a

  View code at this pointBrowse repository at this point

Commits on Jan 3, 2025

• feat: compressed mode by ext.

  dwpeng

  committed
  f5aadf0View commit details

  Copy full SHA for f5aadf0

  View code at this pointBrowse repository at this point

• feat: 添加 validChars 参数到 seqioFile 实现，支持字符验证

  dwpeng

  committed
  b081c5eView commit details

  Copy full SHA for b081c5e

  View code at this pointBrowse repository at this point

Commits on Dec 26, 2024

• update build script

  dwpeng

  committed
  e39a2eaView commit details

  Copy full SHA for e39a2ea

  View code at this pointBrowse repository at this point

Commits on Dec 18, 2024

• feat: add ci and tests for python

  dwpeng

  committed
  b0b68ecView commit details

  Copy full SHA for b0b68ec

  View code at this pointBrowse repository at this point

Commits on Dec 17, 2024

• chore: fix memory leak.

  dwpeng

  committed
  7099d53View commit details

  Copy full SHA for 7099d53

  View code at this pointBrowse repository at this point

Commits on Dec 12, 2024

• feat: add close, fflush, and reset methods to seqioFile; improve memory management and error handling

  dwpeng

  committed
  cc4dd87View commit details

  Copy full SHA for cc4dd87

  View code at this pointBrowse repository at this point

• chore: update subproject commit for pybind11

  dwpeng

  committed
  6996644View commit details

  Copy full SHA for 6996644

  View code at this pointBrowse repository at this point

• refactor: rename module from _seqio to _fastseqio and update references

  dwpeng

  committed
  847719aView commit details

  Copy full SHA for 847719a

  View code at this pointBrowse repository at this point

• feat: support write in python and support more methods for Record

  dwpeng

  committed
  9a13b28View commit details

  Copy full SHA for 9a13b28

  View code at this pointBrowse repository at this point

Commits on Nov 12, 2024

• feat: add writeFasta and writeFastq methods to seqioFile class

  dwpeng

  committed
  fd4ef24View commit details

  Copy full SHA for fd4ef24

  View code at this pointBrowse repository at this point

Commits on Mar 27, 2024

• move test-* to python/test/*

  dwpeng

  committed
  86f0e33View commit details

  Copy full SHA for 86f0e33

  View code at this pointBrowse repository at this point