All pull requests

Pull requests

• Separate files for RESTRICTED sequences

  #347·joverlee521 opened Nov 14, 2025Contributor·2 tasks·

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• chore(deps/ci): upgrade pre-commit hook versions for snakemake and toml-sort

  #338·corneliusroemer opened Sep 18, 2025Member·1 task·

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• phylogenetic: Use augur subsample

  #334·victorlin opened Aug 26, 2025Member·1 of 4 tasks·

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• phylogenetic: Support nextstrain run (alternative)

  #330·joverlee521 opened Jul 23, 2025Contributor·2 tasks·

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• (WIP) phylogenetic: Support nextstrain run

  #327·joverlee521 opened Jul 9, 2025Contributor·2 tasks·

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  10

• Switch to using pathoplexus for nextclade

  #323·corneliusroemer opened Jul 2, 2025Member·2 tasks·

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  7

• [pre-commit.ci] pre-commit autoupdate

  #309·pre-commit-ci[bot] opened Mar 24, 2025Bot·

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• Remove reverse column, associated script, and references

  #210·joverlee521 opened Oct 13, 2023Contributor·1 task·

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  1