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@Nesvilab

Nesvilab

Alexey Nesvizhskii's proteome bioinformatics group.

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  1. FragPipe FragPipe Public

    A cross-platform proteomics data analysis suite

    Java 323 49

  2. MSFragger MSFragger Public

    Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics

    HTML 133 12

  3. MSBooster MSBooster Public

    MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring

    Java 23 2

  4. philosopher philosopher Public

    PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering

    Go 130 22

  5. PTM-Shepherd PTM-Shepherd Public

    A tool for summarizing open search results

    Java 17 8

  6. IonQuant IonQuant Public

    A label free quantification tool.

    20 9

Repositories

Showing 10 of 56 repositories
  • philosopher Public

    PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering

    Nesvilab/philosopher's past year of commit activity
    Go 130 GPL-3.0 22 53 (1 issue needs help) 0 Updated Oct 5, 2026
  • FragAnnotator Public

    Add matched fragments to psm.tsv

    Nesvilab/FragAnnotator's past year of commit activity
    Java 0 MIT 0 0 0 Updated Oct 1, 2026
  • OPair_FragPipe Public Forked from lonelu/PTMLocalization
    Nesvilab/OPair_FragPipe's past year of commit activity
    GDB 0 MIT 1 0 0 Updated Sep 23, 2026
  • MBG Public

    match between glycans

    Nesvilab/MBG's past year of commit activity
    Java 0 Apache-2.0 0 0 0 Updated Sep 24, 2026
  • MSBooster Public

    MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring

    Nesvilab/MSBooster's past year of commit activity
    Java 23 Apache-2.0 2 0 0 Updated Sep 23, 2026
  • CPTAC_AML Public
    Nesvilab/CPTAC_AML's past year of commit activity
    R 1 0 0 0 Updated Sep 15, 2026
  • FragSummarizer Public
    Nesvilab/FragSummarizer's past year of commit activity
    Java 1 Apache-2.0 0 0 0 Updated Sep 11, 2026
  • FragPipeAnalystR Public
    Nesvilab/FragPipeAnalystR's past year of commit activity
    R 10 GPL-3.0 4 11 6 Updated Aug 21, 2026
  • PepCentric Public

    Search proteins and peptides against repository-scale MS/MS spectra within seconds

    Nesvilab/PepCentric's past year of commit activity
    1 0 0 0 Updated Aug 13, 2026
  • FragPipe Public

    A cross-platform proteomics data analysis suite

    Nesvilab/FragPipe's past year of commit activity
    Java 323 49 41 1 Updated Aug 7, 2026
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