Tommi Mäklin themaklin
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ntcomp
Rust 0 1
Sequencing data compression using SBWT and k-bounded matching statistics.
bioinformatics compression decompression genomics rust sbwt sequencing-data
Updated 2026-10-05 11:54:38 +02:00
maklin.fi
Shell 0 0
Sources for my personal webpage https://maklin.fi Created using hugo.
Updated 2026-10-04 17:31:16 +02:00
msweep-rs
Rust 0 1
(WIP) Rust port of mSWEEP
Updated 2026-09-17 10:57:46 +02:00
kbo
Rust 0 0
Local alignment search with k-bounded matching statistics.
bioinformatics genomics kbo rust sbwt sequence-alignment
Updated 2026-09-16 11:10:12 +02:00
ahda
Rust 0 1
Compression, format conversion, and set operations for pseudoalignment data
Updated 2026-09-11 15:54:06 +02:00
msweep-user-manual
0 0
mSWEEP user manual for the Rust port at https://codeberg.org/themaklin/msweep-rs
Updated 2026-09-11 15:33:19 +02:00
mixt
Rust 0 0
Rust library for estimating mixture model weights.
Updated 2026-07-09 18:42:18 +02:00
panaani
Rust 0 0
Pangenome-aware dereplication of bacterial genomes into ANI clusters.
Updated 2026-01-06 13:44:56 +01:00
puoluekone
R 0 0
An interactive R-shiny app for determining optimal political party composition based on fitness between answers given by a user and members of the parties. Estimated using the bacterial strain identification method, mSWEEP https://doi.org/10.1101/33.
Updated 2026-01-06 11:53:40 +01:00
booktex
TeX 0 0
LaTeX template for a book containing several articles from different authors, possibly in different languages, with their own different bibliographies.
Updated 2026-01-06 11:52:44 +01:00
vaikkari
TeX 0 0
LaTeX source code for my doctoral dissertation "Probabilistic Methods for High-Resolution Metagenomics". Available from the digital repository of the University of Helsinki at https://helda.helsinki.fi/handle/10138/349862.
creative-commons doctoral-dissertation latex-document metagenomics probabilistic-modeling university-of-helsinki
Updated 2026-01-06 11:50:27 +01:00
vaaligp
R 0 0
Gaussian process poll aggregator for 2023 Finnish parlamentary election polling using Stan.
Updated 2026-01-06 11:46:04 +01:00
agc-istream
C++ 0 0
(wip) Read samples from agc archives using C++ iostreams.
Updated 2026-01-06 11:43:05 +01:00
cpprate
C++ 0 0
Reimplementation of the variable selection via RATE method https://github.com/lorinanthony/RATE
Updated 2026-01-06 11:36:57 +01:00
kbo-gui
Rust 0 0
Graphical web user interface for the kbo local aligner built with Dioxus
bioinformatics dioxus genomics kbo rust sbwt sequence-aligner wasm webassembly
Updated 2026-01-06 11:29:28 +01:00