cancer-research

🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/index.html

visualization bioinformatics r somatic-variants easy-to-use sbs somatic-mutations cnv nmf cancer-research dbs mutational-signatures copynumber-signatures indel signature-extraction nmf-extraction cosmic-signatures bayesian-nmf

Updated Mar 17, 2023
R

Chaste / Chaste

Star

Chaste - Cancer Heart And Soft Tissue Environment - main public repository.

c-plus-plus computational-biology electrophysiology mathematical-modelling hpc-applications cancer-research mathematical-biology developmental-biology cell-based physiology

Updated Mar 17, 2023
C++

MathCancer / PhysiCell

Star

PhysiCell: Scientist end users should use latest release! Developers please fork the development branch and submit PRs to the dev branch. Thanks!

bioinformatics cross-platform simulation-framework agent-based-modeling 3d cancer-research simulation-modeling physicell tissue-engineering

Updated Mar 21, 2023
C++

FunGeST / Palimpsest

Star

An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.

visualization bioinformatics r genomics cancer-genomics clonality somatic-mutations nmf cancer-research bioinformatics-analysis structural-variation tumor-evolution mutational-signatures tumor-heterogeneity signature-extraction nmf-extraction structural-variant-signatures driver-events

Updated Jun 15, 2021
R

haranrk / DigiPathAI

Star

Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay

python gui deep-learning segmentation cancer-research openslide wsi medical-image-analysis

Updated Nov 26, 2022
JavaScript

sigven / cpsr

Star

Cancer Predisposition Sequencing Reporter (CPSR)

docker cancer workflow-engine vcf cancer-genomics pathogenicity cancer-research report-generator pathogenic-variants germline-variants acmg inherited reporting-tool predisposition cancer-predisposition pathogenic-loci genomics-england-panelapp cancer-predisposition-report

Updated Nov 18, 2022
R

albinsjolin / cancer-whitepaper

Sponsor

Star

Cancer Whitepaper

cancer health healthcare cancer-research fasting

Updated Feb 28, 2023

kevinhu / cancer_data

Star

A unified downloader+preprocessor for cancer genomics datasets

data-science genomics tcga dataset cancer-genomics gtex hdf5-format cancer-research ccle

Updated Dec 8, 2022
Python

MIMBCD-UI / meta

Star

📎 About MIMBCD-UI Project

medical-imaging usability user-interface user-experience human-computer-interaction multimodality diagnosis user-centered-design cancer-research radiomics breast-cancer health-informatics computer-aided-detection computer-aided-diagnosis

Updated Jun 14, 2022

mida-project / meta

Star

📎 About MIDA Project

machine-learning deep-neural-networks deep-learning deep-reinforcement-learning biomedical-informatics assistant medical-imaging cancer-imaging-research user-interface user-experience human-computer-interaction biomedical user-centered-design cancer-research biomedical-image-processing biomedical-engineering medical-image-processing health-informatics biomedical-data-science medical-assistant

Updated Dec 11, 2020

JZK00 / BM-GBM

Star

Some accessible radiomics datas were provided in this link.

classification cancer-research radiomics

Updated Dec 17, 2021
Python

hw538 / cfDNAPro

Star

cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis

bioinformatics r cancer-genomics cancer-research whole-genome-sequencing genomics-visualization liquid-biopsy cell-free-dna early-detection swgs

Updated Mar 11, 2023
R

epigen / cll-chromatin

Star

Data analysis scripts for Rendeiro et. al, 2016 (doi:10.1038/ncomms11938)

bioinformatics analysis atac-seq cancer-research

Updated Nov 10, 2017
Python

enginBozkurt / Lymphoma-Cancer-Classification

Star

A PyTorch implementation for differentiating between different types of lymphoma cancer

deep-learning classification cancer-research cancer-variants pathology pytorch-implementation

Updated Jan 5, 2019
Jupyter Notebook

mrzResearchArena / Anticancer-Peptides-CNN

Star

Anticancer Peptide Identification employing Multi-headed Deep-CNN

bioinformatics deep-learning computational-biology convolutional-neural-networks cancer-research anticancer-peptides

Updated Nov 18, 2021
Jupyter Notebook

lidox / reaction-test

Star

Android app testing reaction times during awake brain surgeries

timeseries prediction forecasting outlier-detection cancer-research reaction-test brain-surgery time-series-analysis anomaly-detection time-series-forecast holt-winters z-score chebyshev-s-inequality triple-exponential-smoothing rousseeuw-and-croux sn-estimator reaction-time

Updated Sep 4, 2018
Java

koushikkumarl / capsuleNetwork_cancerclassification

Star

Image classification on lung and colon cancer histopathological images through Capsule Networks or CapsNets.

image-classification image-recognition lung-cancer-detection confusion-matrix size-optimization cancer-research python-notebook classification-algorithm cancer-detection colon-cancer capsule-network capsnets histopathology-images heatmap-visualization

Updated Jan 7, 2021
Jupyter Notebook

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