clara-parabricks / GenomeWorks

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[cudaextender] Update readme with cudaextender info cudaextender

#582 opened Oct 1, 2020 by atadkase

[cudaextender] Performance analysis cudaextender

#580 opened Oct 1, 2020 by atadkase

[cudaextender] Kernel optimizations cudaextender

#579 opened Oct 1, 2020 by atadkase

[cudaextender] Make output compression async cudaextender

#578 opened Oct 1, 2020 by atadkase

[cudaextender] Explore configurability of kernel launch parameters. cudaextender

#577 opened Oct 1, 2020 by atadkase

[cudaextender] Calculate memory limits based on datastructures used. cudaextender

#576 opened Oct 1, 2020 by atadkase

[cudaextender] Check if entropy calculation can be done using a float. cudaextender

#575 opened Oct 1, 2020 by atadkase

[cudaextender] Replace cudaextender's hardcoded encoding scheme with cudasequence cudaextender

#574 opened Oct 1, 2020 by atadkase

[cmake] move version file configuration into base sdk

#572 opened Sep 24, 2020 by tijyojwad v0.6.0

[pygenomeworks] evaluate_paf script is too slow to be practical for very large PAF files

#571 opened Sep 23, 2020 by edawson

[sdk] Update the way we fetch CUB sdk

#570 opened Sep 23, 2020 by mimaric

[cudapoa/cudaaligner] fix compute version to 60 cudaaligner cudapoa

#566 opened Sep 22, 2020 by tijyojwad v0.6.0

[pygenomeworks] Support reading compressed PAF as input enhancement

#559 opened Sep 15, 2020 by edawson

GenomeWorks compiling error sdk

#554 opened Sep 9, 2020 by asantat

[common] Rename device_copy_n to reflect non-blocking behavior enhancement good first issue style

#541 opened Aug 25, 2020 by ahehn-nv

[cudamapper] Do not do self-mapping of reads cudamapper

#531 opened Aug 5, 2020 by mimaric

[cudapoa] consolidate macros for banded alignment in single header cudapoa enhancement good first issue

#528 opened Aug 4, 2020 by tijyojwad

[cudapoa] add description to error codes cudapoa enhancement

#527 opened Aug 4, 2020 by r-mafi

[cudamapper] Throw custom exception when Index not found cudamapper

#526 opened Aug 3, 2020 by mimaric

[cudamapper] Use stream callback functions to update Index state cudamapper

#525 opened Aug 3, 2020 by mimaric

[cudamaper] Use events to sync generation and communication streams cudamapper

#524 opened Aug 3, 2020 by mimaric

[cudapoa] unify CUDA kernels in banded and adaptive NW cudapoa

#522 opened Jul 31, 2020 by r-mafi

[cudaaligner] Tests should load data from file cudaaligner good first issue

#505 opened Jul 15, 2020 by ahehn-nv

[cudapoa] add tests for banded and adaptive alignment cudapoa enhancement

#502 opened Jul 14, 2020 by r-mafi

[cudapoa][cudaaligner] adding support for different types of gap penalty cudaaligner cudapoa enhancement

#496 opened Jul 13, 2020 by r-mafi

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