# Generated by roxygen2: do not edit by hand

if(getRversion() >= "3.6.0") {

S3method(ape::as.phylo, dendrogram)

} else {export(as.phylo.dendrogram)}

S3method("labels<-",default)

S3method("labels<-",dendrogram)

S3method("labels<-",dist)

S3method("labels<-",hclust)

S3method("labels<-",phylo)

S3method(all.equal,dendlist)

S3method(all.equal,dendrogram)

S3method(as.dendrogram,phylo)

S3method(as.dendrogram,pvclust)

S3method(as.dendrogram,varclus)

S3method(as.ggdend,dendrogram)

S3method(as.hclust,pvclust)

S3method(click_rotate,default)

S3method(click_rotate,dendrogram)

S3method(cor_bakers_gamma,default)

S3method(cor_bakers_gamma,dendlist)

S3method(cor_bakers_gamma,dendrogram)

S3method(cor_bakers_gamma,hclust)

S3method(cor_cophenetic,default)

S3method(cor_cophenetic,dendlist)

S3method(cutree,agnes)

S3method(cutree,default)

S3method(cutree,dendrogram)

S3method(cutree,diana)

S3method(cutree,hclust)

S3method(cutree,phylo)

S3method(dend_diff,dendlist)

S3method(dend_diff,dendrogram)

S3method(entanglement,default)

S3method(entanglement,dendlist)

S3method(entanglement,dendrogram)

S3method(entanglement,hclust)

S3method(entanglement,phylo)

S3method(ggplot,dendrogram)

S3method(ggplot,ggdend)

S3method(head,dendlist)

S3method(head,dendrogram)

S3method(highlight_distinct_edges,dendlist)

S3method(highlight_distinct_edges,dendrogram)

S3method(identify,dendrogram)

S3method(labels,hclust)

S3method(labels,phylo)

S3method(ladderize,dendlist)

S3method(ladderize,dendrogram)

S3method(ladderize,phylo)

S3method(nleaves,default)

S3method(nleaves,dendlist)

S3method(nleaves,dendrogram)

S3method(nleaves,hclust)

S3method(nleaves,phylo)

S3method(nnodes,default)

S3method(nnodes,dendrogram)

S3method(nnodes,hclust)

S3method(nnodes,phylo)

S3method(plot,dendlist)

S3method(plot,find_k)

S3method(print,ggdend)

S3method(prune,default)

S3method(prune,dendrogram)

S3method(prune,hclust)

S3method(prune,phylo)

S3method(prune,rpart)

S3method(rev,hclust)

S3method(rotate,default)

S3method(rotate,dendrogram)

S3method(rotate,hclust)

S3method(rotate,phylo)

S3method(set,data.table)

S3method(set,dendlist)

S3method(set,dendrogram)

S3method(shuffle,default)

S3method(shuffle,dendlist)

S3method(shuffle,dendrogram)

S3method(shuffle,hclust)

S3method(shuffle,phylo)

S3method(sort,dendlist)

S3method(sort,dendrogram)

S3method(sort,hclust)

S3method(tanglegram,default)

S3method(tanglegram,dendlist)

S3method(tanglegram,dendrogram)

S3method(tanglegram,hclust)

S3method(tanglegram,phylo)

S3method(text,pvclust)

S3method(unbranch,default)

S3method(unbranch,dendrogram)

S3method(unbranch,hclust)

S3method(unbranch,phylo)

S3method(untangle,default)

S3method(untangle,dendlist)

S3method(untangle,dendrogram)

export("%>%")

export("labels<-")

export("labels_cex<-")

export("labels_colors<-")

export("order.dendrogram<-")

export(Bk)

export(Bk_permutations)

export(Bk_plot)

export(DendSer.dendrogram)

export(FM_index)

export(FM_index_R)

export(FM_index_permutation)

export(all_couple_rotations_at_k)

export(all_unique)

export(as.dendlist)

export(as.ggdend)

export(as_hclust_fixed)

export(assign_dendextend_options)

export(assign_values_to_branches_edgePar)

export(assign_values_to_leaves_edgePar)

export(assign_values_to_leaves_nodePar)

export(assign_values_to_nodes_nodePar)

export(branches_attr_by_clusters)

export(branches_attr_by_labels)

export(branches_attr_by_lists)

export(branches_color)

export(circlize_dendrogram)

export(click_rotate)

export(collapse_branch)

export(collapse_labels)

export(color_branches)

export(color_labels)

export(color_unique_labels)

export(colored_bars)

export(colored_dots)

export(colour_branches)

export(common_subtrees_clusters)

export(cor.dendlist)

export(cor_FM_index)

export(cor_bakers_gamma)

export(cor_common_nodes)

export(cor_cophenetic)

export(count_terminal_nodes)

export(cut_lower_fun)

export(cutree)

export(cutree_1h.dendrogram)

export(cutree_1k.dendrogram)

export(dend_diff)

export(dend_expend)

export(dendbackback)

export(dendextend_options)

export(dendlist)

export(dist.dendlist)

export(dist_long)

export(distinct_edges)

export(duplicate_leaf)

export(entanglement)

export(fac2num)

export(find_dend)

export(find_dendrogram)

export(find_k)

export(fix_members_attr.dendrogram)

export(flatten.dendrogram)

export(flip_leaves)

export(get_branches_heights)

export(get_childrens_heights)

export(get_leaves_attr)

export(get_leaves_branches_attr)

export(get_leaves_branches_col)

export(get_leaves_edgePar)

export(get_leaves_nodePar)

export(get_nodes_attr)

export(get_nodes_xy)

export(get_root_branches_attr)

export(get_subdendrograms)

export(ggdend)

export(hang.dendrogram)

export(has_component_in_attribute)

export(has_edgePar)

export(has_nodePar)

export(heights_per_k.dendrogram)

export(highlight_branches)

export(highlight_branches_col)

export(highlight_branches_lwd)

export(highlight_distinct_edges)

export(intersect_trees)

export(is.dendlist)

export(is.dendrogram)

export(is.dist)

export(is.hclust)

export(is.natural.number)

export(is.phylo)

export(labels_cex)

export(labels_col)

export(labels_colors)

export(ladderize)

export(leaf_Colors)

export(leaf_colors)

export(lowest_common_branch)

export(match_order_by_labels)

export(match_order_dendrogram_by_old_order)

export(max_depth)

export(min_depth)

export(na_locf)

export(nleaves)

export(nnodes)

export(noded_with_condition)

export(order.hclust)

export(partition_leaves)

export(place_labels)

export(plot_horiz.dendrogram)

export(prepare.ggdend)

export(prune)

export(prune_common_subtrees.dendlist)

export(prune_leaf)

export(pvclust_edges)

export(pvclust_show_signif)

export(pvclust_show_signif_gradient)

export(pvrect2)

export(raise.dendrogram)

export(rank_branches)

export(rank_order.dendrogram)

export(rank_values_with_clusters)

export(rect.dendrogram)

export(reindex_dend)

export(remove_branches_edgePar)

export(remove_leaves_nodePar)

export(remove_nodes_nodePar)

export(rotate)

export(rotate_DendSer)

export(sample.dendrogram)

export(seriate_dendrogram)

export(set)

export(set_labels)

export(shuffle)

export(sort_2_clusters_vectors)

export(sort_dist_mat)

export(sort_levels_values)

export(tanglegram)

export(theme_dendro)

export(unbranch)

export(unclass_dend)

export(untangle)

export(untangle_DendSer)

export(untangle_labels)

export(untangle_random_search)

export(untangle_step_rotate_1side)

export(untangle_step_rotate_2side)

export(untangle_step_rotate_both_side)

export(which_leaf)

export(which_node)

import(datasets)

import(ggplot2)

import(grDevices)

import(graphics)

import(magrittr)

import(stats)

import(utils)

importFrom(magrittr,"%>%")

importFrom(viridis,viridis)