Issues

• Creating Foldcomp Database Containing Discontinuous Domains

  steineggerlab/foldcomp#75 · Filter by author aidenkoloj opened on Jun 5, 2026
  2

• [FEATURE REQUEST] Build both Python interface and CLI through PyPI

  steineggerlab/foldcomp#73 · Filter by author valentynbez opened on Jan 8, 2026

• filtering with length and plddt

  steineggerlab/foldcomp#70 · Filter by author Atomu2014 opened on Oct 22, 2025
  2

• Foldcomp concatdbs

  enhancement
  steineggerlab/foldcomp#65 · Filter by author hmms117 opened on Jul 3, 2025
  1

• Add AFESM representative structures

  enhancementquestion
  steineggerlab/foldcomp#63 · Filter by author KasperRavenBio opened on May 19, 2025
  4

• no similar sequence inpre exixiting database of swissprot for limnospira

  steineggerlab/foldcomp#62 · Filter by author gilles-20 opened on Feb 17, 2025

• Encode only backbone atoms

  enhancement
  steineggerlab/foldcomp#59 · Filter by author alex-hh opened on Oct 10, 2024
  2

• Exclude Amino Acid letter During Compression

  enhancementquestion
  steineggerlab/foldcomp#58 · Filter by author mahdip72 opened on Aug 21, 2024
  1

• Are these not all coords?

  invalidquestion
  steineggerlab/foldcomp#57 · Filter by author patrickbryant1 opened on Jul 11, 2024
  1

• Errors in highquality_clust30

  steineggerlab/foldcomp#56 · Filter by author valentynbez opened on Jul 5, 2024
  3

• extracting PDBs

  steineggerlab/foldcomp#55 · Filter by author Yogesh1-11 opened on Jun 1, 2024

• foldcomp.open - return empty structure string if structure is not found in database

  bug
  steineggerlab/foldcomp#54 · Filter by author valentynbez opened on Apr 1, 2024

• highquality_cluster30 - fragmented sequences split on undetermined aminoacid

  help wanted
  steineggerlab/foldcomp#53 · Filter by author valentynbez opened on Mar 27, 2024

• Heads up that pip install from pypi doesn't work with python 3.12

  bug
  steineggerlab/foldcomp#52 · Filter by author chasemc opened on Mar 27, 2024

• ESMFold database header issues

  help wanted
  steineggerlab/foldcomp#51 · Filter by author valentynbez opened on Mar 25, 2024
  1

• Multi-chain pdb

  enhancement
  steineggerlab/foldcomp#50 · Filter by author Marc-commits opened on Mar 24, 2024
  1

• Advice for installation with pip

  enhancement
  steineggerlab/foldcomp#49 · Filter by author miangoar opened on Mar 24, 2024
  3

• foldcomp compress breaks input pdb file into multiple output files

  enhancementhelp wanted
  steineggerlab/foldcomp#47 · Filter by author vagkaratzas opened on Jan 6, 2024
  2

• Extraction of FASTA adds unnecessary .pdb extension if absent, which leads to inconsistensies

  help wanted
  steineggerlab/foldcomp#45 · Filter by author valentynbez opened on Dec 27, 2023
  2

• Database extraction failed

  help wanted
  steineggerlab/foldcomp#42 · Filter by author valentynbez opened on Nov 7, 2023
  2

• Dealing with nested subdirectories

  enhancementquestion
  steineggerlab/foldcomp#40 · Filter by author jomimc opened on Oct 18, 2023
  2

• Subsetting databases

  bug
  steineggerlab/foldcomp#39 · Filter by author patrickbryant1 opened on Aug 9, 2023
  7

• using foldcomp database with a foldseek search

  question
  steineggerlab/foldcomp#38 · Filter by author emzodls opened on Jul 25, 2023
  1

• Multithreaded database query

  enhancement
  steineggerlab/foldcomp#36 · Filter by author valentynbez opened on Jun 2, 2023

• Error compresing PDB

  bugenhancement
  steineggerlab/foldcomp#35 · Filter by author valentynbez opened on May 29, 2023
  2