Sitelet https://github.com/samtools/bcftools/commits/develop/

Commits

Commits on Sep 30, 2026

Update NEWS
pd3
committed
347c273
Further refactored the calc_mwu_biasZ function

jkbonfield
authored and
pd3
committed
3dce573
mpileup: use 64-bit accumulators in the Mann-Whitney bias Z scores

Cindy Krafft
authored and
pd3
committed
041c66c
Report time progres only with verbosity >3
pd3
committed
f91b859
introduce --threads to sort command

hiruna72
authored and
pd3
committed
46425ae
add timers around sort and merge output functions and print elapsed time

hiruna72
authored and
pd3
committed
146d394

Commits on Sep 21, 2026

Switch containers to ones built by samtools/c-maint

daviesrob
authored and
pd3
committed
edf7fd9

Commits on Sep 10, 2026

NEWS: mention the new --progress option in mpileup, norm and view

carstenerickson
authored and
pd3
committed
9c792a5
mpileup: add --progress[=INT] to periodically print the current position

carstenerickson
authored and
pd3
committed
3d19b07
norm: add --progress[=INT] to periodically print the current position

carstenerickson
authored and
pd3
committed
2c41db2
view: add --progress[=INT] to periodically print the current position

carstenerickson
authored and
pd3
committed
db84e0b
csq: fix segfault when the VCF header has no contig lines

balwierz
authored and
pd3
committed
b6e4d4c
Support symbolic alleles at multiallelic sites
pd3
committed
cb2ea2d

Commits on Sep 9, 2026

Fix a segfault caused by incorrect handling of symbolic ALT alleles
pd3
committed
7abcc0d

Commits on Sep 2, 2026

Commits on Aug 30, 2026

New option `-F, --format` to extend the consequence annotation.
pd3
committed
905ea78

Commits on Aug 28, 2026

To comply with the VCF specification, the INFO/MQ output tag is now declared as Type=Float rather than Type=Integer
pd3
committed
9fb92d7

Commits on Aug 21, 2026

Commits on Jul 30, 2026

Better error reporting on invalid --samples file, don't segfault
pd3
committed
f098ab5

Commits on Jul 23, 2026

Ignore git safe.directory warnings in VERSION query

jkbonfield
authored and
pd3
committed
daafac9
Fix version.sh to work on a git clone without git executable.

jkbonfield
authored and
pd3
committed
475055d
Fix plot-vcfstats to work on uncompressed data.

jkbonfield
authored and
pd3
committed
4ee48aa
Add more CI tests for linux containers and BSD/Solaris VMs

jkbonfield
authored and
pd3
committed
61ba4d0
Add concurrency checks to the older linux/mac/windows CI tests

jkbonfield
authored and
pd3
committed
5a57714

Commits on Jul 13, 2026

Read compressed vchk files
pd3
committed
270751f

Commits on Jul 9, 2026

Merge version number bump and NEWS file from master
daviesrob
committed
b4f3d4f
Release 1.24
daviesrob
committed
fb9f0f7

Commits on Jul 8, 2026

Make gtcheck use a stable sort for "idbl"

jkbonfield
authored and
pd3
committed
74318ad

Commits on Jul 6, 2026

Make reglist_sort_() stable

daviesrob
authored and
pd3
committed
f440c1c

Commits on Jul 2, 2026

Changed the version copyright date.

whitwham
authored and
pd3
committed
d4254b1

Commits on Jun 23, 2026

Change sort order for trio-dnm3 test file

daviesrob
authored and
whitwham
committed
7813ff9