From 73389cd71961a6247bdc7cc5305e6aae0e6397d2 Mon Sep 17 00:00:00 2001 From: amjjbonvin Date: Fri, 7 Nov 2025 13:25:03 +0100 Subject: [PATCH] Added permanent Prot-ON result link --- .../HADDOCK24/HADDOCK24-antibody-antigen-basic/index.md | 7 ++----- education/HADDOCK3/HADDOCK3-antibody-antigen/index.md | 2 +- 2 files changed, 3 insertions(+), 6 deletions(-) diff --git a/education/HADDOCK24/HADDOCK24-antibody-antigen-basic/index.md b/education/HADDOCK24/HADDOCK24-antibody-antigen-basic/index.md index 02d9aa9c..97d98667 100644 --- a/education/HADDOCK24/HADDOCK24-antibody-antigen-basic/index.md +++ b/education/HADDOCK24/HADDOCK24-antibody-antigen-basic/index.md @@ -857,12 +857,9 @@ Considering the predicted most advantageous mutations, how different are those t -_Note_: For the purpose of our EMBO course pre-calculated runs are provided: - -* [_4G6M_matched_](http://proton.tools.ibg.edu.tr:8001/result/dae4ee4df0ec47e9a119fd512fdbfd98){:target="_blank"} (crystal structure) -* [_cluster5_1_](http://proton.tools.ibg.edu.tr:8001/result/73cdda1fade6457faefa98af9e55b454){:target="_blank"} (top ranked cluster, l-RMSD 7.3Å) -* [_cluster2_1_](http://proton.tools.ibg.edu.tr:8001/result/5ab290262ad340eaba0e6357b6ef46f2){:target="_blank"} (second best ranked cluster, l-RMSD 2.2Å) +_Note_: A pre-calculated run for the 4G6M crystal structure is provided: +* [_4G6M_matched_](http://proton.tools.ibg.edu.tr:8001/result/4G6M_matched_chain_A_EvoEF1){:target="_blank"} (crystal structure)

diff --git a/education/HADDOCK3/HADDOCK3-antibody-antigen/index.md b/education/HADDOCK3/HADDOCK3-antibody-antigen/index.md index d789b512..5b9033a0 100644 --- a/education/HADDOCK3/HADDOCK3-antibody-antigen/index.md +++ b/education/HADDOCK3/HADDOCK3-antibody-antigen/index.md @@ -1690,7 +1690,7 @@ PROT-ON (Structure-based detection of designer mutations in PROTein-protein inte Here we will use PROT-ON to analyse the interface of our antibody-antigen complex. For that, we will use the provided matched reference structure (`4G6M-matched.pdb`) in which both chains of the antibody have the same chainID (A), which allows us to analyse all interface residues of the antibody at once. -__Note:__ Pre-calculated PROT-ON results for this system can be accessed [here](http://proton.tools.ibg.edu.tr:8001/result/ebcdec31308c46acb82e8010f7f21df1){:target="_blank"}. +__Note:__ Pre-calculated PROT-ON results for this system can be accessed [here](http://proton.tools.ibg.edu.tr:8001/result/4G6M_matched_chain_A_EvoEF1){:target="_blank"}. Connect to the PROT-ON server page (link above) and fill in the following fields: