Issues

• Running planemo on interactive tools (ITs) fails with No URL available for this interactive tool.

  galaxyproject/planemo#1731 · Filter by author paulzierep opened on Sep 30, 2026
  1

• Lint: metadata_source is unvalidated, and format_source accepts any param name

  enhancement
  galaxyproject/planemo#1722 · Filter by author jmchilton opened on Sep 21, 2026

• Build and Target a Modern Galaxy Docker Image

  bugenhancement
  Bug

  galaxyproject/planemo#1721 · Filter by author jmchilton opened on Sep 21, 2026

• Retire or Modernize the Planemo Virtual Appliance Maybe?

  docs missingenhancementhelp wanted
  galaxyproject/planemo#1720 · Filter by author jmchilton opened on Sep 21, 2026
  1

• Docs toctree has no task-level grouping; automating_workflows is a 31-line stub

  docs missingworkflows
  galaxyproject/planemo#1719 · Filter by author jmchilton opened on Sep 19, 2026

• Workflow tutorial is anchored to the archived usegalaxy-eu/workflow-testing repo

  docs missingworkflows
  galaxyproject/planemo#1718 · Filter by author jmchilton opened on Sep 19, 2026

• Workflow test collection assertions are silently skipped unless spelled element_tests

  galaxyproject/planemo#1705 · Filter by author jmchilton opened on Sep 14, 2026

• workflow_lint --iwc does not check the date on the newest CHANGELOG heading

  galaxyproject/planemo#1694 · Filter by author jmchilton opened on Sep 9, 2026

• workflow_lint --iwc should error, not warn, when a workflow has no test cases

  galaxyproject/planemo#1693 · Filter by author jmchilton opened on Sep 9, 2026

• Run Engine for Embedded Galaxy

  enhancement
  galaxyproject/planemo#1686 · Filter by author jmchilton opened on Aug 25, 2026

• Deduplicate planemo.io.wait_on in favor of galaxy.util.wait.wait_on

  galaxyproject/planemo#1680 · Filter by author jmchilton opened on Aug 20, 2026

• Meta: repository-level linting for data managers and tool data tables

  enhancementlinting
  galaxyproject/planemo#1672 · Filter by author jmchilton opened on Jul 24, 2026
  2

• planemo run --no_wait crashes with UnboundLocalError for tools

  galaxyproject/planemo#1668 · Filter by author jmchilton opened on Jul 21, 2026

• Global config values bypass click.Path conversion (resolve_path is dead code)

  galaxyproject/planemo#1667 · Filter by author jmchilton opened on Jul 21, 2026

• Add a GA4GH WES execution engine to planemo run (--engine wes)

  galaxyproject/planemo#1651 · Filter by author jmchilton opened on Jun 6, 2026

• workflow_test_init fails with FileNotFoundError when workflow input labels contain forward slashes (/)

  galaxyproject/planemo#1629 · Filter by author dadrasarmin opened on Mar 25, 2026

• planemo test crashes when workflow test specifies non-existent outputs

  galaxyproject/planemo#1625 · Filter by author d-callan opened on Mar 5, 2026

• Improve version linter

  galaxyproject/planemo#1613 · Filter by author bernt-matthias opened on Feb 9, 2026
  

• Planemo improvements

  galaxyproject/planemo#1602 · Filter by author mvdbeek opened on Jan 27, 2026

• Test functionality for ITs

  galaxyproject/planemo#1600 · Filter by author mvdbeek opened on Jan 14, 2026

• planemo lint false positive warning about HelpInvalidRST when using local images?

  galaxyproject/planemo#1589 · Filter by author kostrykin opened on Dec 17, 2025
  1

• SyntaxWarning:

  galaxyproject/planemo#1584 · Filter by author lecorguille opened on Nov 13, 2025

• --test_data option of planemo t does not work

  galaxyproject/planemo#1536 · Filter by author simonbray opened on Jun 13, 2025

• mulled-search gives error when searching GitHub sources due to lack of valid token

  galaxyproject/planemo#1535 · Filter by author kbessonov1984 opened on Jun 4, 2025

• Getting ShedVersion error on unmodified tools that reside in the same directory that modified tools

  galaxyproject/planemo#1525 · Filter by author pcm32 opened on May 12, 2025
  1