2018-04-04 George G. Vega Yon <g.vegayon@gmail.com>

* src/plot.cpp: Separating edge from arrow.

* R/diffnet-methods.r: Idem

2018-04-02 George G. Vega Yon <g.vegayon@gmail.com>

* R/plot_diffnet2.r: Fixing bug in diffMap on plot_diffnet2.

* R/rdiffnet.r: Loading netdiffuseR when using ncpus.

2018-03-26 George G. Vega Yon <g.vegayon@gmail.com>

* R/formulas.r: Adding diffreg (including tests).

* vignettes/*: idem

* tests/*: idem

2017-10-23 George G. Vega Yon <g.vegayon@gmail.com>

* R/igraph.r: Uncesary permutation + adding undirected.

* R/mentor.r: Fixing bug in plotting method. Sorting was wrong.

* R/*.r: Idem.

2017-10-16 George G. Vega Yon <g.vegayon@gmail.com>

* R/stats.R: New argument for exposure.

* : Adding new examples in vignettes.

* : Getting ready for cran.

2017-10-09 George G. Vega Yon <g.vegayon@gmail.com>

* R/misc.r: add_dimnames is now based on environments and more general.

* R/stats.r: Cleanning code

* *: Trying to pin down problem with Armadillo 0.8+. Solved.

2017-10-02 George G. Vega Yon <g.vegayon@gmail.com>

* R/igraph.r: Working on function to set default plot params.

* R/rdiffnet-methods.r: Cleaner code.

* R/rdiffnet.r: New function rdiffnet_multiple.

2017-09-22 George G. Vega Yon <g.vegayon@gmail.com>

* R/diffnet_methods.r: Keep working on consistency

* R/igraph.r: New function to set defaults for any plot function.

2017-09-22 George G. Vega Yon <g.vegayon@gmail.com>

* R/diffnet-methods.r: Working on plotting methods. Adding arguments

consistency across the package, and fixing some bugs in plot_diffnet

regarding the colors of vertices.

2017-09-20 George G. Vega Yon <g.vegayon@gmail.com>

* R/misc.r: Fixed bug in compute_size.

* R/diffnet-methods.r: Added title to plot_diffnet.

2017-09-18 George G. Vega Yon <g.vegayon@gmail.com>

* R/diffnet-methods.r: Rewritten plot functions.

* R/misc.r: New function to set size according to degree.

* R/igraph.r: New set of functions and default (aesthetics).

2017-09-15 George G. Vega Yon <g.vegayon@gmail.com>

* R/diffnet-methods.r: Making the coding more neat.

* R/plot_diffnet2.r: Changing defaults

* R/rdiffnet.r: Working on way the function is written. Also now

threshold.dist can be a scalar and no diffusion can be ok as well.

2017-09-11 George G. Vega Yon <g.vegayon@gmail.com>

* R/plot_diffnet2.r: Change name of the file and fixed bug in setting

the color of the colorKey.

* R/diffnet-methods.r: Simplifying functions.

* R/misc.r: Idem.

2017-09-01 George G. Vega Yon <g.vegayon@gmail.com>

* src/netdiffuser_extra.cpp: Since atan2 checks the quadrant,

the angle() function is no longer needed.

2017-08-24 George G. Vega Yon <g.vegayon@gmail.com>

* : Creating the configure.ac, src/Makevars.in, and cleanup

files so that autoconf sets OpenMP.

2017-08-23 George G. Vega Yon <g.vegayon@gmail.com>

* R/egonets.R: Working on possible bug reported by CRAN.

* R/stats.R: Documentation.

* src/Makevars*: Adding OpenMP support via RcppArmadillo update

* src/stats.cpp: Fixing bug in vertex_covariate_distance

plus making some speed fixes.

* src/rgraph.cpp: More efficient rgraph_ba_cpp.

2017-07-23 George G. Vega Yon <g.vegayon@gmail.com>

* : Working on making the package more light weight.

* : Checking included datasets duplicated columns.

* : Working on documentation

2017-07-23 George G. Vega Yon <g.vegayon@gmail.com>

* src/adjmat.cpp: rewriting egonet_attrs_cpp. Now more efficient

should correct errors produced on windows.

* R/*: Fixing various bugs and spelling.

2017-07-17 George G. Vega Yon <g.vegayon@gmail.com>

* src/adjmat.cpp: Function for computing geodesics is now more

efficient by using batch constructors when updating matrices.

* R/bootnet.r, R/struct_test.r: Fixing hist methods.

2017-07-16 George G. Vega Yon <g.vegayon@gmail.com>

* R/rewire.r: The function rewire_graph now also allows the method

QAP.

2017-07-14 George G. Vega Yon <g.vegayon@gmail.com>

* src/stats.cpp: Moran's I now computing sd.

* R/moran.r: Idem.

* tests/testthat/test-moran.r: Idem.

2017-04-28 George G. Vega Yon <g.vegayon@gmail.com>

* src/rgraph.cpp: New version of the -rgraph_er_cpp- and -rgraph_ba_cpp-

function, way faster using batch insertion of arma::sp_mat.

2017-04-07 George G. Vega Yon <g.vegayon@gmail.com>

* R/bass.r: Adding the bass function w/ corresponding

tests and examples.

2017-03-13 George G. Vega Yon <g.vegayon@gmail.com>

* R/adjmat.R: Working on doc.

* R/bootnet.r: Working on hist method.

* R/egonets.R: Fixing bug in matrix methods.

* R/mentor.R: Fixing bug in fetching nodes labels.

* R/misc.R: New function to coerce to dgCMatrix.

* R/struct_test.R: Working on print and hist methods.

* tests/testthat/*.r: Adding a bunch of new tests.

2017-03-01 George G. Vega Yon <g.vegayon@gmail.com>

* R/struct_equiv.R: Replaced approx_geodesic

* R/adjmat.R: Fixing man.

* R/diffnet-methods.R: 'Bug' when calling igraph::graph_from...

didn't preserved sorting of vertices.

* R/igraph.R: idem.

* R/mentor.r: Migrating the algorithm to its own file.

* R/random_graph.R: WS now returns an adjmat with dimnames.

* R/stats.R: Working on doc.

* R/struct_equiv.R: Adding examples for transformGraphBy

2017-02-27 George G. Vega Yon <g.vegayon@gmail.com>

* R/adjmat.R: Adding approx_geodesic.

* R/diffnet-class.R: Doc approx_geodesic in summary

* R/diffnet-methods.R: idem + add

* R/egonet.R: Adding example with static net

* R/stats.R: Adding matrix_compare and mentor_matching

* src/adjmat.cpp: approx_geodesic

* src/stats.cpp: matrix_compare

2016-12-14 George G. Vega Yon <g.vegayon@gmail.com>

* R/misc.R: Adding new option to the drawColorKey

2016-12-08 George G. Vega Yon <g.vegayon@gmail.com>

* R/netmatch.r: New set of functions for matching with networks.

* R/bootnet.r: Documenting and fixing some bugs.

2016-12-07 George G. Vega Yon <g.vegayon@gmail.com>

* src/netdiffuser_extra.cpp: Removed unused function.

* R/bootnet.r: Adding methods for other types of graphs.

* R/rewire.R: Recycling code in list vs array.

* R/diffnet-methods.R: Adding new methods for -nodes-.

2016-12-06 George G. Vega Yon <g.vegayon@gmail.com>

* R/bootnet.r: Still working on the BS.

* src/netdiffuser_extra.*: Adding bootnet_fillself to deal with i

sampled more than once.

* R/struct_test.R: Fixing bug in variance calculation.

2016-12-05 George G. Vega Yon <g.vegayon@gmail.com>

* bootnet.r: Implementing Snijders and Borgatti's bootstrapping

on networks.

2016-11-03 George G. Vega Yon <g.vegayon@gmail.com>

* README.Rmd: In mosaicplot (workhorse of plot.diffnet_adopters), the

color= option wasn't coloring cell by cell. So removed example.

2016-11-02 George G. Vega Yon <g.vegayon@gmail.com>

* R/stats.R: Fixed bug with NA in classify_adopters.default.

* tests/testthat/test-stats.R: Adjusted expectation according

to change in classify.

* .travis.ci: r-devel not working.

* .appveyor: r-patch not working.

2016-11-01 George G. Vega Yon <g.vegayon@gmail.com>

* src/*: Re-organized functions + headers, reducing lib space.

* R/*: Tweaked a couple of examples for reducing running time.

* tests/testtat/*: idem.

2016-10-28 George G. Vega Yon <g.vegayon@gmail.com>

* src/rewire_swap.cpp: 'Commented' alt.hexagons since the implementation

is flawed.

* R/rewire.R: Idem.

* test/testthat/*.R: More tests.

2016-10-27 George G. Vega Yon <g.vegayon@gmail.com>

* src/rgraph_ba.*: Renamed files (and header def) to fix build error.

* R/diffnet-methods.R: Fixing small bugs in -.diffnet and data-checks

in plot_threshold.

* test/testthat/*.R: More tests.

* R/stats.R: Small changes.

2016-10-26 George G. Vega Yon <g.vegayon@gmail.com>

* R/*: Working with @template of roxygen2.

* R/diffnet-class.R: Removing unsued code.

* R/diffnet-methods: Fixing bugs in %*% and * for diffnet objs.

* R/random_graph.R: Implementing Scale-free homophilic nets.

* R/stats.R: Adding titles to plot.diffnet_degSeq.

* R/survey_to_diffnet.R: More data pre-processing.

* src/rgraph_scale_free.*: Added scale-free homophilic to rgraph_ba,

and changed the name.

* R/rewire.R: New functions permute_graph and rewire_qap.

* man-roxygen/: Where templates live (roxygen2).

* src/rgraph.cpp: permute_graph.

2016-10-18 George G. Vega Yon <g.vegayon@gmail.com>

* R/diffnet-indexing.R: Fixing bug on [[<-.diffnet.

* R/rewire.R: althex is currently on dev (so change when TRUE).

* src/netdiffuser_extra.h: Removing unsued function.

* src/rgraph_er.cpp: Removing redundant function.

* R/random_graph.R: rgraph_ws uses a single cpp fun. (idem)

* test/testthat/*: More tests.

2016-10-17 George G. Vega Yon <g.vegayon@gmail.com>

* R/graph_data.R: Bug in ordering (now its preserved)

* test/testthat/*: New select_egoalter and graph_data tests.

2016-10-13 George G. Vega Yon <g.vegayon@gmail.com>

* R/diffnet-class.R: Function -diffnet.attrs<-- Defunct-ed.

* R/select_egoalter.R: New summary method+fix bug with arrays.

* R/struct_test.R: Working on doc.

* src/struct_test.cpp: Removing unused function -hatf-.

* tests/testthat/*.R: Several new tests.

2016-10-12 George G. Vega Yon <g.vegayon@gmail.com>

* R/diffnet-class.R: Small bug when reading dynamic attributes. and

printing bug+removing dimnames.

* R/adjmat.R: no dimnames.

* R/diffnet-c.R: idem.

* R/diffnet-indexing.R: idem.

* R/igraph.R: idem.

* R/read_write_foreign.R: Working on bug with read_net (still on dev).

* R/diffnet-methods.R: Bug in ^ operator. And plot_adopters returned

NULL.

* R/spatial.R: Fixing bugs + adding it as a function in the namespace.

* tests/testthat/*.R: Adding several new tests to cover code.

* R/stats.R: Rewriting functions in R.

* R/stats.cpp: idem + new function mahalanobis distance.

* R/rdiffnet.R: Adding default name and behavior.

* src/netdiffuser_extra.cpp: Fixing bug.

* src/rgraph_ba.cpp: Removing unused version of ba model.

2016-10-07 George G. Vega Yon <g.vegayon@gmail.com>

* R/adjmat.R: Changing syntax.

* R/graph_data.R: Working on new function to convert igraph,network,

etc. to 'generic graphs' so methods in netdiffuseR work.

* R/stats.R: New plot method for the output of degree seq (which is

now a diffnet_degSeq, matrix class object. rm -degree_cpp- and add

-.dgr-. Same with -exposure_cpp- and -.exposure-.

* src/stats.cpp: See above.

* src/adjmat.cpp: Fixing bug on undirected graphs.

* R/diffnet-class.R: New desc meta for the class (and methods).

* R/diffnet-methods.R: Idem.

* R/igraph.R: Idem.

2016-10-05 George G. Vega Yon <g.vegayon@gmail.com>

* R/plot_diffnet2.R: Added new options, adding sharp criter for diffmap.

* R/random_graph.R: New argument for -rgraph_ba-. Now allows for !self.

* R/read_write_foreign.R: New function for reading binary files from

UCINET.

* R/struct_test.R: Fixing bug in c. method.

* src/rgraph_ba.cpp: New argument for !self.

2016-09-02 George G. Vega Yon <g.vegayon@gmail.com>

* R/struct_equiv.R: New function to apply transformation to a matrix

considering structural zeros -transformGraphBy-.

* .travis.yml: Removing dev version from tests.

2016-08-31 George G. Vega Yon <g.vegayon@gmail.com>

* src/struct_test.cpp: New function to compare vertices at dyadic level.

-ego_variance-.

* src/stats.cpp: Changing name of function sqdistance to quaddistance.

* src/rewire_swap.cpp: Adding alternating hexagons algorithm (on dev).

2016-08-25 George G. Vega Yon <g.vegayon@gmail.com>

* src/stats.cpp: New function to compare vertices at dyadic level.

2016-08-23 George G. Vega Yon <g.vegayon@gmail.com>

* src/rewire_swap.cpp: New argument for assuring aperiodicity on MCMC.

* R/rewire.R: Documenting new argument.

2016-08-19 George G. Vega Yon <g.vegayon@gmail.com>

* src/netdiffuser_extra.cpp: Functions for dyadic comparison.

* src/stats.cpp: Changing definition of vertex_compare.

* R/struct_test.R: Working on doc + adding some debugs.

2016-08-12 George G. Vega Yon <g.vegayon@gmail.com>

* R/diffnet-methods.R: Fixing bug in plot_diffnet on the range of the

plot.

* R/struct_test.R: New function for exact test (experimental).

2016-08-02 George G. Vega Yon <g.vegayon@gmail.com>

* src/struct_test.cpp: Adding new functions for computing exact text.

* R/struct_test.R: Adding new functions for computing exact text.

2016-08-02 George G. Vega Yon <g.vegayon@gmail.com>

* src/netdiffuser_extra.cpp: Adding internal function to compute distances.

This is used in the new version of rgraph_ba.

* src/rgraph_ba.cpp: Working on new algorithm for scale-free + covariates.

2016-08-01 George G. Vega Yon <g.vegayon@gmail.com>

* R/rewire.R: Changing default number in `n_rewires` from 100 to 20 + adding

explaination.

2016-07-23 George G. Vega Yon <g.vegayon@gmail.com>

* R/moran.R: Adding variance of Moran's I (not user visible yet)

* R/diffnet-methods.R: idem.

2016-07-07 George G. Vega Yon <g.vegayon@gmail.com>

* R/diffnet-indexing.R: Adding method for [[.diffnet <- NULL

* tests/testthat/*: Adding more tests + small changes to reduce time.

2016-07-06 George G. Vega Yon <g.vegayon@gmail.com>

* R/struc_test.R: Changing defaults in n_rewires.

2016-06-26 George G. Vega Yon <g.vegayon@gmail.com>

* R/egonets.R: Fixing small bug on the matrix methods

* R/diffnet-methods.R: No actual significant changes

* R/plot_diffnet2.R: Fixing small bug and improving doc.

2016-06-21 George G. Vega Yon <g.vegayon@gmail.com>

* R/misc.R: Changing defaults and adding examples

* R/struct_test.R: Adding example with c.diffnet_struct_test

* DESCRIPTION: Getting ready for CRAN

2016-06-20 George G. Vega Yon <g.vegayon@gmail.com>

* R/struct_test.R: Changes in hist.diffnet_struc_test method.

* R/diffnet-methods.R: Extending the %*% method.

* R/stats.R: New argument for threshold.

2016-06-17 George G. Vega Yon <g.vegayon@gmail.com>

* R/plot_diffnet2.R: Adding new arguments to deal with new function

to rescale the size of vertices.

* R/misc.R: Adding new function to rescale vertex size.

* R/diffnet-methods.R: Update to plot_diffnet.

2016-06-13 George G. Vega Yon <g.vegayon@gmail.com>

* R/diffnet-methods.R: Fixing warnings from R CMD check.

* R/imports.R: idem.

* R/misc.R: idem.

* R/plot_diffnet2.R: idem

* R/stats.R: idem.

* R/struct_test.R: idem.

2016-06-10 George G. Vega Yon <g.vegayon@gmail.com>

* ChangeLog: Sarting ChangeLog

* R/adjmat.R: Adding new function `simmelian_mat`

* R/diffnet-methods.R: New methods str, dimnames, t, &, |, dim, %*%.

* R/egonets.R: Adding new arg.

* R/misc.R: New function to create a color key.

* R/plot_diffnet2.R: Fixing small bugs and improving doc.

* R/rewire.R: Fixing bug.

* R/stats.R: New function to classify adopters.

* R/struct_test.R: New method c and helper function.

* man/*: Adding documentation.