Issues

• us.gcr.io/broad-dsp-gcr-public/terra-jupyter-hail:latest and us.gcr.io/broad-dsp-gcr-public/terra-jupyter-aou:latest pyspark dependency issue

  DataBiosphere/terra-docker#506 · Filter by author andrewjordank opened on Jun 19, 2025

• cmake not available but present in the Dockerfile?

  DataBiosphere/terra-docker#478 · Filter by author AMCalejandro opened on Feb 28, 2024

• Unable to build terra-docker-r image

  DataBiosphere/terra-docker#477 · Filter by author AMCalejandro opened on Feb 28, 2024

• terra-jupyter-base should preserve /home/jupyter contents and environment variables such as PATH

  DataBiosphere/terra-docker#471 · Filter by author droazen opened on Nov 3, 2023
  1

• terra-jupyter-base should allow non-sudo/root use of conda

  DataBiosphere/terra-docker#470 · Filter by author droazen opened on Nov 3, 2023
  1

• The terra-jupyter-gatk image is not compatible with GATK

  DataBiosphere/terra-docker#464 · Filter by author droazen opened on Oct 24, 2023

• Using Hail with dsub

  DataBiosphere/terra-docker#440 · Filter by author buutrg opened on Jul 14, 2023
  1

• Running terra-jupyter-r locally on gcp vm

  DataBiosphere/terra-docker#435 · Filter by author MiTPenguin opened on Jun 28, 2023
  1

• update of Cromshell causes failed build in terra-jupyter-base

  DataBiosphere/terra-docker#377 · Filter by author HBBOUWMAN opened on Dec 7, 2022
  1

• Easy method to shrink size of terra-jupyter-r

  DataBiosphere/terra-docker#352 · Filter by author sjfleming opened on Sep 10, 2022

• Shrink size of terra-jupyter-base

  DataBiosphere/terra-docker#333 · Filter by author SHuang-Broad opened on Jun 15, 2022
  8

• Adding PLINKv1.9 and PLINKv2.0

  DataBiosphere/terra-docker#283 · Filter by author m-makarious opened on Dec 16, 2021
  2

• FR: Include igv-jupyter in terra-jupyter-base.

  DataBiosphere/terra-docker#271 · Filter by author johntbates opened on Nov 10, 2021
  2

• OpenVINO image can't detect GPUs

  DataBiosphere/terra-docker#264 · Filter by author rtitle opened on Oct 18, 2021
  3

• New docker images not successfully launching as 'cloud environments'?

  DataBiosphere/terra-docker#255 · Filter by author amygdala opened on Sep 17, 2021
  2

• Custom docker images a lot larger than expected

  DataBiosphere/terra-docker#253 · Filter by author MiTPenguin opened on Sep 14, 2021
  3

• terra-jupyter-r question about multi-core operations

  DataBiosphere/terra-docker#210 · Filter by author sjfleming opened on Apr 19, 2021
  13

• Python: making it easier for users to override installed packages

  DataBiosphere/terra-docker#112 · Filter by author gokceneraslan opened on Apr 17, 2020
  2

• Python: selected firecloud and pylint versions are incompatible

  DataBiosphere/terra-docker#92 · Filter by author jmthibault79 opened on Jan 15, 2020

• Python: selected google-auth and setuptools versions are incompatible

  DataBiosphere/terra-docker#91 · Filter by author jmthibault79 opened on Jan 15, 2020

• FR: install the firecloud python library in the R image

  DataBiosphere/terra-docker#89 · Filter by author mbookman opened on Jan 13, 2020
  1

• Inconsistent file permisions for /home/jupyter-user

  DataBiosphere/terra-docker#58 · Filter by author mtmorgan opened on Nov 19, 2019
  1